ORTQI confirmed thesis by publication.
Ch. 2. Pub version. Permitted. Publisher = Elsevier. Elsevier has a policy of allowing published articles to remain in theses.  https://www.elsevier.com/about/policies/copyright/permissions (click on Can I include/use my article in my thesis/dissertation)
Ch. 3. Pub version. Publisher = Wiley. Couldn't locate any permissions to suggest inclusion permitted. Removed and citation inserted.
Ch. 4. Sub. version (pre-print). Permitted. Published source must be acknowledged https://v2.sherpa.ac.uk/id/publication/22262
Ch. 5. pub version. CC licence. Permitted. Published source must be acknowledged. https://v2.sherpa.ac.uk/id/publication/22262
 10/11/21 LM